Alignment of alleles: Atlantic cod (Gadus morhua) IGIV1S28

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   V   T   V   T   Q   T   P   V       V   S   F   T   P   G   S   T   V   T
  AJ225240,IGIV1S28*01          CAG GTG ACT GTG ACT CAG ACA CCA GTA ... GTG TCC TTT ACT CCA GGA TCC ACA GTC ACT

  AJ225262,IGIV1S28*02          --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---

                                                         __________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   K   S   N   P   A   V   Y   S   N   Y                       L   H
  AJ225240,IGIV1S28*01          CTG ACC TGT AAA AGC AAC CCA GCG GTG TAC AGC AAT TAT ... ... ... ... ... CTA CAC

  AJ225262,IGIV1S28*02          --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- ---

                                                                                             ______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   K   P   G   E   A   P   K   L   I   I   R   R   T   T
  AJ225240,IGIV1S28*01          TGG TAC CAA CAG AAA CCT GGC GAA GCC CCA AAG CTC ATC ATA AGA CGA ACA ACT ... ...
                                                                                                                                                                                                T  
  AJ225262,IGIV1S28*02          --- --- --- --- --- --- --- --- --- --- --- --- -C- --- --- --- --- --- ... ...

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     T   L   V   S   P   T   P       A   R   F   S   G   S   G
  AJ225240,IGIV1S28*01          ... ... ... ... ... ACA CTT GTA TCA CCA ACA CCA ... GCT CGG TTT AGT GGC AGT GGA

  AJ225262,IGIV1S28*02          ... ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                         S   S   T   D   F   S   L   T   I   N   A   A   Q   R   E   D   A   A
  AJ225240,IGIV1S28*01          ... ... AGC AGC ACT GAC TTC TCT CTG ACC ATC AAC GCC GCC CAG CGT GAA GAT GCA GCA

  AJ225262,IGIV1S28*02          ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                __________________CDR3-IMGT____________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116
                                 V   Y   H   C   Q   S   L   H   Y   P   N   S   V   W   V   N
  AJ225240,IGIV1S28*01          GTT TAT CAC TGT CAG AGT CTC CAC TAT CCT AAC AGT GTC TGG GTG AAC  #c

  AJ225262,IGIV1S28*02          --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---      #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 21/03/2002
Last updated: Friday, 22-Sep-2023 18:24:47 CEST
Author: Nathalie Bosc